species:   Rhsol
pid:       PID0607
parent:    Rhi-milR-174
paralog:   
locus:     KB317768.1:8775-8887
matures:   ['UUUAAGGAUUAUGAAAUGGAGGCU', 'CCUGCAUAACAAGUCCAAAG']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317768.1:8775-8887

4 out of bounds
56 alignments
51 proper strand
21 stranded perfect matches

                          *********************                     *************************                    
CAAGUCCCUGGAGGAAAUCCUCCAAUUCCUGCAUAACAAGUCCAAAGCGCCCCUGUCCAUCAAACGCGCAUUUAAGGAUUAUGAAAUGGAGGCUUGCCUACUCUUCUACCAAG
........((((((....))))))...(((.(((..((((((((((((((...((.....))...)))).)))..))))).))..))).))).....................
----------------------------------------------------------------------UUUAAGGAUUAUGAAAUGGAGGCU------------------- l=24 a=1 c
---------------------------CCUGCAUAACAAGUCCAAAG------------------------------------------------------------------ l=20 a=0 c*
----------------------------------------------------------------------UUUAAGGAUUAUGAAAUGGAGGC-------------------- l=23 a=15 ma
----------------------------CUGCAUAACAAGUCCAAAG------------------------------------------------------------------ l=19 a=0 ma*

---------------------------------------------------------------------AUUUAAGGAUUAUGAAAUGGAGGC-------------------- l=24 a=2 
----------------------------------------------------------------------UUUAAGGAUUAUGAAAUGGAGGC-------------------- l=23 a=15 (ma)
----------------------------------------------------------------------UUUAAGGAUUAUGAgAUGGAGGC-------------------- l=23 a=2 
----------------------------------------------------------------------UUUAAGGAUUAUGAgAUGGAGGCU------------------- l=24 a=6 
----------------------------------------------------------------------UUUAAGGAUUAUGAAAUGGAGGCU------------------- l=24 a=1 (c)
----------------------------------------------------------------------UUUAAGGAUUAUGAAAUGGAGGCg------------------- l=24 a=1 
----------------------------------------------------------------------UUUAAGGAUUAUGAAAUGGAGGCUa------------------ l=25 a=2 
-----------------------------------------------------------------------UUAAGGAUUAUGAAAUGGAGGC-------------------- l=22 a=1 
-----------------------------------------------------------------------UUAAGGAUUAUGAAAUGGAGGCUgGCC--------------- l=27 a=1 
------------------------------------------------------------------------UAAGGAUUAUGAAAUGGAGG--------------------- l=20 a=1 
------------------------------------------------------------------------UAAGGAUUAUGAgAUGGAGGCU------------------- l=22 a=2 
------------------------------------------------------------------------UAAGGAUUAUGAAAUGGAGGCU------------------- l=22 a=1 
------------------------------------------------------------------------UAAGGAUUAUGAAAUGGAGGCUgG----------------- l=24 a=6 
------------------------------------------------------------------------UAAGGAUUAUGAAAUGGAGGCUgGC---------------- l=25 a=2 
-------------------------------------------------------------------------AAGGAUUAUGAAAUGGAGGCUgGC---------------- l=24 a=1 
--------------------------------------------------------------------------AGGAUUAUGAAAUGGAGGCUgG----------------- l=22 a=3 
--------------------------------------------------------------------------AGGAUUAUGAAAUGGAGGCUgGC---------------- l=23 a=1 
--------------------------------------------------------------------------AGGAUUAUGAAAUGGAGGCUgGCC--------------- l=24 a=1 
------------------------------------------------------------------------------UUAUGAAAUGGAGGCUgGCCUA------------- l=22 a=1 
------------------------------------------------------------------------------UUAUGAAAUGGAGGCUgGCCUAC------------ l=23 a=1 

mb-01011
ax-1011011
ku-01
ss-111111101000
fn-111
